TAP ABI3/VP1 in Spirogyra sp.

Full lineage¹: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Zygnemophyceae; Zygnematophycidae; Zygnematales; Zygnemataceae; Spirogyra; unclassified Spirogyra

Protein source: Delaux et al. (2015) Proc Natl Acad Sci U S A 112:13390-5


The colour code corresponds to the rules for the domains:

should be contained
should not be contained

Domain rules

B3
AP2
Auxin_resp
WRKY

(Domain names are clickable)



List of proteins (10)

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namename additionClick button to show/hide sequence: Download sequence?
c0_seq11_4[662 - 2914] len=4418 path=[5789:0-477 6267:478-504 6294:505-625 6415:626-628 6418:629-769 6559:770-821 6611:822-841 6631:842-1179 6969:1180-1287 7077:1288-2688 8478:2689-2902 12816:2903-2903 8692:2904-4042 9831:4043-4095 9884:4096-4349 12840:4350-4417]
c0_seq12_4[538 - 2790] len=4294 path=[5789:0-477 6267:478-504 6418:505-645 6559:646-697 6611:698-717 6631:718-1055 6969:1056-1163 7077:1164-2564 8478:2565-2778 12816:2779-2779 8692:2780-3918 9831:3919-3971 9884:3972-4225 12840:4226-4293]
c0_seq13_4[514 - 2766] len=4270 path=[5789:0-477 6415:478-480 6418:481-621 6559:622-673 6611:674-693 6631:694-1031 6969:1032-1139 7077:1140-2540 8478:2541-2754 12816:2755-2755 8692:2756-3894 9831:3895-3947 9884:3948-4201 12840:4202-4269]
c0_seq14_4[662 - 2914] len=4149 path=[5789:0-477 6267:478-504 6294:505-625 6415:626-628 6418:629-769 6559:770-821 6611:822-841 6631:842-1179 6969:1180-1287 7077:1288-2688 8478:2689-2902 12816:2903-2903 8692:2904-4042 9831:4043-4095 13598:4096-4148]
c0_seq15_4[538 - 2790] len=4025 path=[5789:0-477 6267:478-504 6418:505-645 6559:646-697 6611:698-717 6631:718-1055 6969:1056-1163 7077:1164-2564 8478:2565-2778 12816:2779-2779 8692:2780-3918 9831:3919-3971 13598:3972-4024]
c0_seq16_4[514 - 2766] len=4001 path=[5789:0-477 6415:478-480 6418:481-621 6559:622-673 6611:674-693 6631:694-1031 6969:1032-1139 7077:1140-2540 8478:2541-2754 12816:2755-2755 8692:2756-3894 9831:3895-3947 13598:3948-4000]
c0_seq17_1[169 - 1794] len=3298 path=[12053:0-167 7077:168-1568 8478:1569-1782 12816:1783-1783 8692:1784-2922 9831:2923-2975 9884:2976-3229 12840:3230-3297]
c0_seq18_1[40 - 1773] len=3277 path=[13099:0-38 6969:39-146 7077:147-1547 8478:1548-1761 12816:1762-1762 8692:1763-2901 9831:2902-2954 9884:2955-3208 12840:3209-3276]
c0_seq19_1[169 - 1794] len=3029 path=[12053:0-167 7077:168-1568 8478:1569-1782 12816:1783-1783 8692:1784-2922 9831:2923-2975 13598:2976-3028]
c0_seq20_1[40 - 1773] len=3008 path=[13099:0-38 6969:39-146 7077:147-1547 8478:1548-1761 12816:1762-1762 8692:1763-2901 9831:2902-2954 13598:2955-3007]
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A list of species letter codes included in the protein names can be found here (opens in new tab).

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¹ Information recieved using NCBI E-utilities and NCBI taxonomy database.
Impressum